Variant report

Variant	rs7695269
Chromosome Location	chr4:101744669-101744670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10032456	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6419156	0.95[EUR][1000 genomes]
rs6817785	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990699	0.85[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101740000-101745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:101743200-101745200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:101743600-101745000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:101743800-101745200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:101743800-101745400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:101743800-101745400	Enhancers	NHEK	skin
7	chr4:101744000-101744800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:101744000-101745000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:101744000-101745000	Enhancers	HSMM	muscle
10	chr4:101744000-101745000	Enhancers	NH-A	brain
11	chr4:101744000-101746000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:101744200-101745000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr4:101744200-101745200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:101744200-101745200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr4:101744200-101745200	Enhancers	HMEC	breast
16	chr4:101744400-101744800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:101744400-101745200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:101744400-101747400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:101744600-101745000	Flanking Active TSS	GM12878-XiMat	blood
20	chr4:101744600-101745200	Flanking Active TSS	A549	lung
21	chr4:101744600-101745200	Enhancers	Hela-S3	cervix
22	chr4:101744600-101745200	Enhancers	HSMMtube	muscle
23	chr4:101744600-101745400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr4:101744600-101745400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr4:101744600-101745400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr4:101744600-101745400	Enhancers	Stomach Mucosa	stomach
27	chr4:101744600-101745600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr4:101744600-101745600	Enhancers	HepG2	liver

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