Variant report

Variant	rs769607
Chromosome Location	chr7:49830336-49830337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10280152	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11770047	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12333649	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17133492	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17133494	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1834476	0.87[EUR][1000 genomes]
rs55638585	0.87[EUR][1000 genomes]
rs62454411	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73108820	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606896	chr7:49449367-49830719	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv830996	chr7:49691223-49853606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv3477666	chr7:49826006-49830804	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3477667	chr7:49826006-49830804	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:49816000-49842600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:49819000-49830400	Weak transcription	Ovary	ovary
3	chr7:49826400-49830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:49826600-49830600	Enhancers	Left Ventricle	heart
5	chr7:49828400-49831200	Enhancers	Fetal Heart	heart
6	chr7:49828400-49837800	Weak transcription	Right Ventricle	heart
7	chr7:49829000-49830400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:49829000-49843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:49829600-49830800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:49829600-49831200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:49829800-49830800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:49829800-49831400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:49830000-49830800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr7:49830200-49830400	Enhancers	Right Atrium	heart
15	chr7:49830200-49830600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:49830200-49830800	Enhancers	Esophagus	oesophagus
17	chr7:49830200-49831400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:49830200-49831600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:49830200-49831600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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