Variant report

Variant	rs7696075
Chromosome Location	chr4:79311576-79311577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11098194	0.82[EUR][1000 genomes]
rs11734612	0.96[EUR][1000 genomes]
rs12505864	0.89[EUR][1000 genomes]
rs12508863	0.86[EUR][1000 genomes]
rs12639694	0.87[EUR][1000 genomes]
rs12639734	0.88[EUR][1000 genomes]
rs12640379	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640892	0.89[EUR][1000 genomes]
rs12640944	0.89[EUR][1000 genomes]
rs12643728	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs12644161	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646915	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649321	0.93[EUR][1000 genomes]
rs12649596	0.97[EUR][1000 genomes]
rs12651417	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104315	0.97[EUR][1000 genomes]
rs13116717	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136716	0.97[EUR][1000 genomes]
rs13146451	0.88[EUR][1000 genomes]
rs13148498	0.93[EUR][1000 genomes]
rs1385132	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1385134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471752	0.97[EUR][1000 genomes]
rs1484333	0.90[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes]
rs1484334	0.97[EUR][1000 genomes]
rs1496580	0.88[EUR][1000 genomes]
rs1545894	0.93[EUR][1000 genomes]
rs1552292	0.97[EUR][1000 genomes]
rs1552293	0.97[EUR][1000 genomes]
rs1552294	0.97[EUR][1000 genomes]
rs2035510	0.93[EUR][1000 genomes]
rs2170899	0.93[EUR][1000 genomes]
rs2627652	0.89[EUR][1000 genomes]
rs28600696	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34108240	0.93[EUR][1000 genomes]
rs34109575	0.84[EUR][1000 genomes]
rs34158026	0.88[EUR][1000 genomes]
rs34519238	0.88[EUR][1000 genomes]
rs34567325	0.89[EUR][1000 genomes]
rs35031699	0.84[EUR][1000 genomes]
rs35243121	0.89[EUR][1000 genomes]
rs35355124	0.96[EUR][1000 genomes]
rs35396776	0.97[EUR][1000 genomes]
rs35583270	0.85[EUR][1000 genomes]
rs3749489	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs4975060	0.96[EUR][1000 genomes]
rs4975068	0.89[EUR][1000 genomes]
rs4975090	0.97[EUR][1000 genomes]
rs4975091	0.97[EUR][1000 genomes]
rs4975092	0.97[EUR][1000 genomes]
rs4975096	0.97[EUR][1000 genomes]
rs4975117	0.89[EUR][1000 genomes]
rs4975121	0.88[EUR][1000 genomes]
rs4975122	0.88[EUR][1000 genomes]
rs4975124	0.88[EUR][1000 genomes]
rs4975125	0.88[EUR][1000 genomes]
rs5021255	0.97[EUR][1000 genomes]
rs5021256	0.92[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55663000	0.90[EUR][1000 genomes]
rs56149575	0.91[EUR][1000 genomes]
rs56274836	0.93[EUR][1000 genomes]
rs62308072	0.97[EUR][1000 genomes]
rs62308078	0.94[EUR][1000 genomes]
rs6533669	0.93[EUR][1000 genomes]
rs6533670	0.93[EUR][1000 genomes]
rs66914138	0.93[EUR][1000 genomes]
rs67956146	0.89[EUR][1000 genomes]
rs6815591	0.97[EUR][1000 genomes]
rs6815766	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6815795	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6817678	0.88[EUR][1000 genomes]
rs6824366	0.88[EUR][1000 genomes]
rs6824995	0.87[EUR][1000 genomes]
rs6836084	0.97[EUR][1000 genomes]
rs6847138	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849649	0.83[EUR][1000 genomes]
rs6851427	0.89[EUR][1000 genomes]
rs7655171	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671858	0.82[CHD][hapmap]
rs7678731	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs869349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949506	0.85[EUR][1000 genomes]
rs968120	0.88[EUR][1000 genomes]
rs968121	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79284600-79353600	Weak transcription	Left Ventricle	heart
2	chr4:79288000-79318400	Weak transcription	Pancreas	Pancrea
3	chr4:79291200-79314000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:79291800-79318200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:79292000-79312000	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr4:79292200-79312200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:79292400-79312000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:79295600-79338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:79300800-79313200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:79302400-79312200	Weak transcription	HSMMtube	muscle
11	chr4:79302400-79315400	Weak transcription	Psoas Muscle	Psoas
12	chr4:79302400-79315600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:79302400-79353800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:79308400-79312000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:79308800-79312000	Weak transcription	Lung	lung
16	chr4:79308800-79317600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:79308800-79318600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:79309000-79331000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:79309200-79312600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:79309200-79318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:79309200-79334800	Weak transcription	Fetal Heart	heart
22	chr4:79309400-79314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:79310000-79311800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:79310000-79313000	Weak transcription	Fetal Intestine Small	intestine
25	chr4:79310000-79330800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:79310800-79312000	Weak transcription	Aorta	Aorta
27	chr4:79310800-79316400	Weak transcription	Fetal Kidney	kidney
28	chr4:79310800-79316600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:79310800-79321800	Weak transcription	HepG2	liver
30	chr4:79311000-79314200	Weak transcription	Fetal Intestine Large	intestine
31	chr4:79311000-79318400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:79311000-79318400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:79311000-79334600	Weak transcription	Fetal Lung	lung
34	chr4:79311200-79313600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:79311200-79316200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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