Variant report

Variant	rs7697295
Chromosome Location	chr4:95360346-95360347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95352396..95355285-chr4:95357931..95361265,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1493109	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17378777	0.85[CEU][hapmap];0.82[MEX][hapmap]
rs1820475	0.80[EUR][1000 genomes]
rs2433320	0.85[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs2433322	0.85[CEU][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs2433323	0.80[EUR][1000 genomes]
rs2433327	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2438140	0.91[ASW][hapmap];0.81[CEU][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2438146	0.84[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs2452010	0.86[MEX][hapmap]
rs2452553	0.84[EUR][1000 genomes]
rs2452555	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2452563	0.86[MEX][hapmap]
rs2510762	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2510763	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs2510764	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2510777	0.82[MEX][hapmap]
rs2510781	0.86[MEX][hapmap]
rs2555215	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34570027	0.81[EUR][1000 genomes]
rs774984	0.84[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9990976	1.00[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95357800-95361000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:95358200-95363400	Weak transcription	Fetal Heart	heart
3	chr4:95360000-95361000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:95360200-95363400	Weak transcription	HepG2	liver

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