Variant report

Variant	rs7697350
Chromosome Location	chr4:47922017-47922018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1507915	1.00[AMR][1000 genomes]
rs16860662	1.00[AMR][1000 genomes]
rs16860736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860819	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4695291	1.00[AMR][1000 genomes]
rs4695297	1.00[AMR][1000 genomes]
rs4695298	1.00[AMR][1000 genomes]
rs56687540	1.00[AMR][1000 genomes]
rs6848169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7661190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669567	1.00[AMR][1000 genomes]
rs7684454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7696933	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1013947	chr4:47915527-48052824	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537082	chr4:47915527-48052824	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47918200-47924400	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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