Variant report

Variant	rs7697891
Chromosome Location	chr4:92008873-92008874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10023583	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029387	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs11936423	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11936946	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11938021	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12508842	0.81[CEU][hapmap]
rs13115351	0.81[CEU][hapmap]
rs1461594	0.82[CEU][hapmap]
rs1544385	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17182898	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17183429	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs17243008	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2189186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2214384	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2214385	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2214387	0.83[ASN][1000 genomes]
rs3944131	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4302434	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4635787	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4693258	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4693262	0.81[CHB][hapmap]
rs55871997	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56091462	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59017289	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61117447	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62312188	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62312189	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62312245	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532280	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs67816799	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6842062	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714186	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7655384	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7677433	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7688333	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2757943	chr4:91946664-92146114	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759267	chr4:91946664-92146114	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv10534	chr4:91966600-92009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1831682	chr4:91979094-92114281	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv528519	chr4:92005403-92017500	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv879561	chr4:92005403-92061748	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:92006400-92010000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:92006600-92009200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:92006600-92009400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:92007600-92010000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:92008200-92009200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:92008200-92010200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:92008600-92009400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:92008800-92009000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:92008800-92009000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:92008800-92009400	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links