Variant report

Variant	rs7698675
Chromosome Location	chr4:142594719-142594720
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10028670	0.93[EUR][1000 genomes]
rs1040257	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11100722	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100723	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100724	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508955	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13111860	0.90[EUR][1000 genomes]
rs1476326	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493024	0.89[EUR][1000 genomes]
rs1519550	0.84[EUR][1000 genomes]
rs1519552	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519553	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1589241	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607592	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607593	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850853	0.93[EUR][1000 genomes]
rs2087849	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2254514	0.91[EUR][1000 genomes]
rs2322262	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4956404	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4956407	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6537058	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816210	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs6837991	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841454	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6842194	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661408	0.89[EUR][1000 genomes]
rs7665842	0.81[EUR][1000 genomes]
rs7688250	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9683566	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9684235	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970327	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970328	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990851	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142576400-142598600	Weak transcription	Left Ventricle	heart
2	chr4:142583400-142634600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:142589800-142598600	Weak transcription	Gastric	stomach
4	chr4:142589800-142599000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:142589800-142600000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:142590400-142597400	Weak transcription	A549	lung
7	chr4:142590800-142599000	Weak transcription	NHDF-Ad	bronchial
8	chr4:142593200-142599000	Weak transcription	Psoas Muscle	Psoas

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