Variant report

Variant	rs7699202
Chromosome Location	chr4:151126105-151126106
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10019650	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10031796	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507489	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13107340	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1459744	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459745	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459746	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459747	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459748	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459749	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459751	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1459752	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1563790	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2169086	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2359927	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4025876	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4532220	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4696241	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535718	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6535719	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6535720	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6843630	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7658837	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7659254	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667318	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7699907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307870	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9307871	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9762327	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9997299	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9997489	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9999983	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151097600-151129000	Weak transcription	Lung	lung
2	chr4:151098200-151128000	Weak transcription	Fetal Stomach	stomach
3	chr4:151100000-151127800	Weak transcription	Osteobl	bone
4	chr4:151101600-151127600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:151103200-151138000	Weak transcription	NH-A	brain
6	chr4:151104200-151127400	Weak transcription	Fetal Brain Female	brain
7	chr4:151108600-151130000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:151108800-151129000	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:151109000-151126400	Weak transcription	Fetal Lung	lung
10	chr4:151112600-151128200	Weak transcription	Left Ventricle	heart
11	chr4:151114200-151154200	Weak transcription	Aorta	Aorta
12	chr4:151115400-151127200	Weak transcription	HSMMtube	muscle
13	chr4:151117800-151128200	Weak transcription	Ovary	ovary
14	chr4:151118000-151127200	Weak transcription	Brain Anterior Caudate	brain
15	chr4:151118200-151127000	Weak transcription	Brain Germinal Matrix	brain
16	chr4:151118400-151128200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:151120000-151132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:151120400-151128200	Weak transcription	A549	lung
19	chr4:151120400-151129000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:151122200-151137800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:151122800-151126200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:151123200-151126400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:151123800-151136800	Weak transcription	Fetal Intestine Large	intestine
24	chr4:151124000-151132200	Weak transcription	Right Ventricle	heart
25	chr4:151125200-151127000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:151125400-151127200	Strong transcription	HSMM	muscle
27	chr4:151126000-151128000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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