Variant report

Variant	rs7699489
Chromosome Location	chr4:166352503-166352504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166347673..166350626-chr4:166351468..166354252,2	MCF-7	breast:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10004552	0.83[EUR][1000 genomes]
rs10011232	0.89[AFR][1000 genomes]
rs10018971	0.88[CEU][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10019052	0.88[CEU][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10027722	0.86[AFR][1000 genomes]
rs10029342	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10029982	0.86[AFR][1000 genomes]
rs10033089	0.87[AFR][1000 genomes]
rs10471062	0.89[AFR][1000 genomes]
rs10517846	0.88[CEU][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11724032	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11724900	0.88[CEU][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11724918	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11724925	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11728234	0.88[CEU][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11728267	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11728337	0.88[CEU][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11729298	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11731695	0.88[CEU][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11731727	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11732063	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11732161	0.88[CEU][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11733216	0.87[CEU][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11735569	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11735607	0.88[CEU][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11737162	0.88[AFR][1000 genomes]
rs13102522	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13102614	0.88[CEU][hapmap];0.87[AFR][1000 genomes]
rs13103210	0.85[CEU][hapmap];0.81[AFR][1000 genomes]
rs13103665	0.88[CEU][hapmap];0.87[AFR][1000 genomes]
rs13107292	0.88[CEU][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13110546	0.88[CEU][hapmap];0.91[AFR][1000 genomes]
rs13110900	0.88[CEU][hapmap];0.90[AFR][1000 genomes]
rs13111119	0.88[AFR][1000 genomes]
rs13111122	0.88[AFR][1000 genomes]
rs13125242	0.90[CEU][hapmap];0.89[AFR][1000 genomes]
rs13131303	0.88[CEU][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13131514	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13131657	0.88[CEU][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13131741	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13132068	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13138024	0.89[AFR][1000 genomes]
rs13141616	0.89[AFR][1000 genomes]
rs13147113	0.89[AFR][1000 genomes]
rs13151923	0.87[AFR][1000 genomes]
rs17046419	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17046421	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17046423	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17046430	0.90[AFR][1000 genomes]
rs17046432	0.89[AFR][1000 genomes]
rs17046436	0.91[AFR][1000 genomes]
rs17046441	0.91[AFR][1000 genomes]
rs17046447	0.90[AFR][1000 genomes]
rs17046449	0.91[AFR][1000 genomes]
rs17046452	0.90[AFR][1000 genomes]
rs17440198	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17687178	0.88[CEU][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1946816	0.88[CEU][hapmap];0.87[AFR][1000 genomes]
rs1946817	0.89[AFR][1000 genomes]
rs1946818	0.89[AFR][1000 genomes]
rs2033767	0.88[CEU][hapmap];0.89[AFR][1000 genomes]
rs28412249	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28429925	0.89[AFR][1000 genomes]
rs28450545	0.89[AFR][1000 genomes]
rs28490347	0.89[AFR][1000 genomes]
rs28510895	0.89[AFR][1000 genomes]
rs28516800	0.89[AFR][1000 genomes]
rs28547315	0.86[AFR][1000 genomes]
rs28635186	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28638079	0.89[AFR][1000 genomes]
rs28655558	0.91[AFR][1000 genomes]
rs28660703	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28888680	0.89[AFR][1000 genomes]
rs34313639	0.89[AFR][1000 genomes]
rs34324337	0.91[AFR][1000 genomes]
rs34771634	0.88[AFR][1000 genomes]
rs34843230	0.90[AFR][1000 genomes]
rs35173790	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35186204	0.88[AFR][1000 genomes]
rs35200071	0.89[AFR][1000 genomes]
rs35352686	0.91[AFR][1000 genomes]
rs35434916	0.86[AFR][1000 genomes]
rs35593296	0.91[AFR][1000 genomes]
rs36001045	0.85[AFR][1000 genomes]
rs3943704	0.88[AFR][1000 genomes]
rs4379020	0.90[AFR][1000 genomes]
rs55830608	0.90[AFR][1000 genomes]
rs56189732	0.89[AFR][1000 genomes]
rs56238507	0.89[AFR][1000 genomes]
rs58507021	0.89[AFR][1000 genomes]
rs59611751	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs59831445	0.82[AFR][1000 genomes]
rs61229216	0.90[AFR][1000 genomes]
rs66672542	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs66793975	0.88[AFR][1000 genomes]
rs66799250	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67075652	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs67261593	0.86[AFR][1000 genomes]
rs67371851	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67442618	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs67474738	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs67527862	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs67683477	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs67815427	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs67848784	0.90[AFR][1000 genomes]
rs67904921	0.88[AFR][1000 genomes]
rs67911830	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs68072898	0.88[AFR][1000 genomes]
rs68185452	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6828394	0.81[AFR][1000 genomes]
rs6832392	0.88[CEU][hapmap];0.87[AFR][1000 genomes]
rs6832627	0.88[CEU][hapmap];0.88[AFR][1000 genomes]
rs6833220	0.88[AFR][1000 genomes]
rs72703629	0.81[AFR][1000 genomes]
rs72703630	0.87[AFR][1000 genomes]
rs72703647	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72703648	0.92[AFR][1000 genomes]
rs72703650	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73860742	0.89[AFR][1000 genomes]
rs7677477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9308106	0.81[AFR][1000 genomes]
rs9308107	0.89[AFR][1000 genomes]
rs9308108	0.89[AFR][1000 genomes]
rs9759580	0.85[AFR][1000 genomes]
rs9762244	0.88[AFR][1000 genomes]
rs9993860	0.81[AFR][1000 genomes]
rs9996980	0.82[AFR][1000 genomes]
rs9999463	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166340000-166358800	Weak transcription	Fetal Brain Female	brain
4	chr4:166342800-166360000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166342800-166364000	Weak transcription	HepG2	liver
6	chr4:166343000-166358200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166347400-166360800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:166348400-166361800	Weak transcription	Aorta	Aorta
9	chr4:166350400-166359400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:166351000-166359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:166351600-166355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:166352000-166352600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:166352000-166352600	Strong transcription	Pancreas	Pancrea
14	chr4:166352200-166353200	Enhancers	Fetal Brain Male	brain
15	chr4:166352200-166353400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:166352400-166352600	Enhancers	Brain Angular Gyrus	brain

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