Variant report
| Variant | rs7700017 |
|---|---|
| Chromosome Location | chr4:149987130-149987131 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:16)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:16 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr4:149986865-149987244 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | RAD21 | chr4:149987019-149987169 | SK-N-SH_RA | brain: | n/a | n/a |
| 3 | CTCF | chr4:149987081-149987158 | HUVEC | blood vessel: | n/a | n/a |
| 4 | CTCF | chr4:149987000-149987150 | BE2_C | brain: | n/a | n/a |
| 5 | CTCF | chr4:149987107-149987148 | HepG2 | liver: | n/a | n/a |
| 6 | CTCF | chr4:149986980-149987130 | HBMEC | blood vessel: | n/a | n/a |
| 7 | CTCF | chr4:149987067-149987151 | Medullo | brain: | n/a | n/a |
| 8 | CTCF | chr4:149987022-149987248 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | RAD21 | chr4:149986875-149987327 | ECC-1 | luminal epithelium: | n/a | n/a |
| 10 | CTCF | chr4:149987020-149987170 | WERI-Rb-1 | eye: | n/a | n/a |
| 11 | CTCF | chr4:149987040-149987190 | GM12864 | blood: | n/a | n/a |
| 12 | RAD21 | chr4:149986912-149987190 | SK-N-SH_RA | brain: | n/a | n/a |
| 13 | RAD21 | chr4:149986848-149987327 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 14 | CTCF | chr4:149987040-149987190 | WERI-Rb-1 | eye: | n/a | n/a |
| 15 | CTCF | chr4:149987032-149987157 | GM12878 | blood: | n/a | n/a |
| 16 | RAD21 | chr4:149986923-149987292 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249752 | TF binding region |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs6844096 | 1.00[AMR][1000 genomes] |
| rs6857520 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6858368 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv4544 | chr4:149979800-150026323 | Weak transcription Enhancers Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
