Variant report

Variant	rs7700022
Chromosome Location	chr4:110222221-110222222
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1859143	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843376	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110207400-110223000	Weak transcription	Aorta	Aorta
2	chr4:110217000-110222600	Weak transcription	HSMMtube	muscle
3	chr4:110220000-110222600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:110221200-110222800	Active TSS	Adipose Nuclei	Adipose
5	chr4:110221600-110224200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
6	chr4:110221800-110223000	Bivalent/Poised TSS	Fetal Kidney	kidney
7	chr4:110221800-110224600	Active TSS	Hela-S3	cervix
8	chr4:110222000-110222600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr4:110222000-110222600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
10	chr4:110222000-110222600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
11	chr4:110222000-110222800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
12	chr4:110222000-110223000	Active TSS	HSMM	muscle
13	chr4:110222200-110224600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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