Variant report

Variant	rs7700389
Chromosome Location	chr5:147691936-147691937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:147691898-147691948	AG09319	gingival:	n/a
2	chr5:147691898-147691948	MCF-7	breast:	n/a
3	chr5:147691898-147691948	ovcar-3	ovarian:	n/a
4	chr5:147691898-147691948	LNCaP	prostate:	n/a
5	chr5:147691898-147691948	NT2-D1	testis:	n/a
6	chr5:147691898-147691948	GM06990	blood:	n/a
7	chr5:147691898-147691948	HRE	kidney:	n/a
8	chr5:147691898-147691948	AG10803	skin:	n/a
9	chr5:147691898-147691948	SK-N-SH	brain:	n/a
10	chr5:147691898-147691948	T-47D	breast:	n/a
11	chr5:147691898-147691948	GM12892	blood:	n/a
12	chr5:147691898-147691948	MCF10A-Er-Src	breast:	n/a
13	chr5:147691898-147691948	NHDF-neo	bronchial:	n/a
14	chr5:147691898-147691948	GM12878	blood:	n/a
15	chr5:147691898-147691948	AG04449	skin:	fetal
16	chr5:147691898-147691948	U87	brain:	n/a
17	chr5:147691898-147691948	K562	blood:	n/a
18	chr5:147691898-147691948	HCPEpiC	choroid plexus:	n/a
19	chr5:147691898-147691948	HMEC	breast:	n/a
20	chr5:147691898-147691948	NB4	blood:	n/a
21	chr5:147691898-147691948	HUVEC	blood vessel:	n/a
22	chr5:147691898-147691948	HRPEpiC	eye:	n/a
23	chr5:147691898-147691948	HCF	heart:	n/a
24	chr5:147691898-147691948	SAEC	small airway:	n/a
25	chr5:147691898-147691948	A549	lung:	n/a
26	chr5:147691898-147691948	Jurkat	blood:	n/a
27	chr5:147691898-147691948	AG09309	skin:	n/a
28	chr5:147691898-147691948	ProgFib	skin:	n/a
29	chr5:147691898-147691948	GM19239	blood:	n/a
30	chr5:147691898-147691948	H1-hESC	embryonic stem cell:	embryo
31	chr5:147691898-147691948	CMK	blood:	n/a
32	chr5:147691898-147691948	Caco-2	colon:	n/a
33	chr5:147691898-147691948	HPAEpiC	pulmonary alveolar:	n/a
34	chr5:147691898-147691948	SKMC	muscle:	n/a
35	chr5:147691898-147691948	Hepatocyte	liver:	n/a
36	chr5:147691898-147691948	HCM	heart:	n/a
37	chr5:147691898-147691948	NHBE	bronchial:	n/a
38	chr5:147691898-147691948	SK-N-MC	brain:	n/a
39	chr5:147691898-147691948	HepG2	liver:	n/a
40	chr5:147691898-147691948	AG04450	lung:	fetal
41	chr5:147691898-147691948	HAEpiC	amniotic membrane:	n/a
42	chr5:147691898-147691948	NH-A	brain:	n/a
43	chr5:147691898-147691948	AoSMC	blood vessel:	n/a
44	chr5:147691898-147691948	HRCEpiC	kidney:	n/a
45	chr5:147691898-147691948	HL-60	blood:	n/a
46	chr5:147691898-147691948	PrEC	prostate:	n/a
47	chr5:147691898-147691948	PFSK-1	brain:	n/a
48	chr5:147691898-147691948	HEEpiC	esophagus:	n/a
49	chr5:147691898-147691948	HNPCEpiC	eye:	n/a
50	chr5:147691898-147691948	Hela-S3	cervix:	n/a

No data

Variant related genes	Relation type
SPINK7	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11740595	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv599945	chr5:147649181-147720487	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147671800-147693800	Weak transcription	Left Ventricle	heart
2	chr5:147687800-147694000	Weak transcription	Fetal Heart	heart
3	chr5:147689000-147699600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:147691800-147692000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:147691800-147692200	Enhancers	Gastric	stomach

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