Variant report

Variant	rs7701316
Chromosome Location	chr5:124530399-124530400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124517096..124519190-chr5:124529404..124532074,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55708367	1.00[AMR][1000 genomes]
rs6867985	1.00[AMR][1000 genomes]
rs73297729	1.00[AMR][1000 genomes]
rs73313552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124516200-124532000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:124524600-124532200	Weak transcription	Psoas Muscle	Psoas
3	chr5:124526600-124536000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:124526800-124531600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:124526800-124531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:124526800-124532000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:124526800-124532000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:124526800-124532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:124526800-124532200	Weak transcription	Fetal Stomach	stomach
10	chr5:124526800-124532200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:124526800-124532400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:124526800-124532400	Weak transcription	Fetal Kidney	kidney
13	chr5:124526800-124536000	Weak transcription	Right Atrium	heart
14	chr5:124526800-124536200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:124527000-124531800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:124527000-124532000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:124527000-124532000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:124527000-124532200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:124527000-124532200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:124527000-124532200	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:124527400-124531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:124527400-124532000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:124527400-124532200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:124527400-124535200	Weak transcription	Primary B cells from cord blood	blood
25	chr5:124527600-124531200	Weak transcription	Fetal Heart	heart
26	chr5:124527800-124531600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr5:124527800-124531600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:124528200-124531400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:124529200-124531600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links