Variant report

Variant	rs7701443
Chromosome Location	chr5:142792650-142792651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:142792186..142794602-chr5:142796290..142799004,2	MCF-7	breast:
2	chr5:142783227..142787898-chr5:142788004..142797496,15	K562	blood:
3	chr5:142788011..142789886-chr5:142791170..142792935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113580	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 3 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023976	chr5:142692062-142813664	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7701443	GPR151	cis	cerebellum	SCAN
rs7701443	FIBIN	trans	cerebellum	SCAN
rs7701443	DPYSL3	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142785000-142798200	Weak transcription	Spleen	Spleen
2	chr5:142785400-142795800	Weak transcription	Small Intestine	intestine
3	chr5:142785600-142793200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:142785600-142793400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:142785600-142795800	Weak transcription	Pancreas	Pancrea
6	chr5:142786200-142792800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:142786200-142796000	Weak transcription	HepG2	liver
8	chr5:142788000-142792800	Weak transcription	GM12878-XiMat	blood
9	chr5:142789000-142796000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:142789000-142796200	Enhancers	Dnd41	blood
11	chr5:142790400-142811800	Weak transcription	Primary T cells from cord blood	blood
12	chr5:142790800-142792800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:142791400-142792800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:142791400-142794200	Enhancers	Hela-S3	cervix
15	chr5:142791600-142792800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:142791600-142792800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:142791600-142793000	Enhancers	A549	lung
18	chr5:142791600-142798000	Weak transcription	Gastric	stomach
19	chr5:142791800-142793600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:142792000-142795600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:142792000-142795600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:142792000-142798200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:142792200-142792800	Enhancers	NHLF	lung
24	chr5:142792200-142793600	Weak transcription	Liver	Liver
25	chr5:142792200-142794000	Enhancers	NHDF-Ad	bronchial
26	chr5:142792200-142798600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:142792400-142793400	Enhancers	HUVEC	blood vessel
28	chr5:142792600-142794400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links