Variant report

Variant	rs7701840
Chromosome Location	chr5:147093054-147093055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10037768	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12652081	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2288825	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4515290	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705043	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4705044	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4705192	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:147085000-147093200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:147089800-147093200	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:147091400-147093200	Weak transcription	Brain Anterior Caudate	brain
6	chr5:147091600-147093200	Enhancers	Liver	Liver
7	chr5:147092000-147093800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:147092200-147093600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:147092400-147093800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr5:147092600-147093400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:147092800-147093200	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:147092800-147093200	Weak transcription	Brain Substantia Nigra	brain
13	chr5:147093000-147093200	Enhancers	Brain Angular Gyrus	brain
14	chr5:147093000-147093400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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