Variant report

Variant	rs7702027
Chromosome Location	chr5:127250455-127250456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10036951	0.91[EUR][1000 genomes]
rs10491255	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs17164526	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs17164533	0.82[EUR][1000 genomes]
rs17164534	0.82[EUR][1000 genomes]
rs17839667	0.82[EUR][1000 genomes]
rs2176831	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs34158027	0.87[ASN][1000 genomes]
rs35454950	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs35941177	0.87[ASN][1000 genomes]
rs4836339	0.82[EUR][1000 genomes]
rs58316019	0.82[EUR][1000 genomes]
rs62375893	0.87[ASN][1000 genomes]
rs734642	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7708799	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs7723029	0.81[EUR][1000 genomes]
rs9327454	0.80[EUR][1000 genomes]
rs9327455	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127247000-127252400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:127248400-127252400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:127248600-127251800	Weak transcription	Stomach Mucosa	stomach
4	chr5:127248600-127252600	Weak transcription	Small Intestine	intestine
5	chr5:127249200-127252400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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