Variant report

Variant	rs7702748
Chromosome Location	chr5:42562775-42562776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34035076	1.00[EUR][1000 genomes]
rs35026768	1.00[EUR][1000 genomes]
rs58083538	1.00[EUR][1000 genomes]
rs6861260	1.00[EUR][1000 genomes]
rs6893568	1.00[EUR][1000 genomes]
rs72561782	1.00[EUR][1000 genomes]
rs72561783	1.00[EUR][1000 genomes]
rs7732333	1.00[EUR][1000 genomes]
rs7732349	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42555400-42566000	Enhancers	Liver	Liver
2	chr5:42556200-42565600	Weak transcription	Right Ventricle	heart
3	chr5:42557600-42565000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:42561000-42562800	Enhancers	Adipose Nuclei	Adipose
5	chr5:42561800-42565000	Weak transcription	Ovary	ovary
6	chr5:42561800-42565600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:42562000-42562800	Enhancers	Fetal Heart	heart
8	chr5:42562000-42562800	Enhancers	Stomach Smooth Muscle	stomach
9	chr5:42562000-42563200	Enhancers	Fetal Lung	lung
10	chr5:42562200-42562800	Enhancers	Right Atrium	heart
11	chr5:42562200-42565000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:42562400-42566000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:42562600-42564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:42562600-42565000	Weak transcription	Left Ventricle	heart
15	chr5:42562600-42565000	Weak transcription	Psoas Muscle	Psoas
16	chr5:42562600-42565200	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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