Variant report

Variant	rs77049246
Chromosome Location	chr3:75721818-75721819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:152)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:152 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:75721659-75721905	K562	blood:	n/a	n/a
2	MAX	chr3:75720780-75722001	Hela-S3	cervix:	n/a	chr3:75721295-75721304
3	POLR2A	chr3:75721524-75721922	K562	blood:	n/a	n/a
4	CTCF	chr3:75721720-75721870	GM12874	blood:	n/a	n/a
5	JUND	chr3:75721628-75721894	H1-hESC	embryonic stem cell:	n/a	n/a
6	GABPA	chr3:75721511-75722013	MCF-7	breast:	n/a	n/a
7	RFX5	chr3:75721075-75721845	Hela-S3	cervix:	n/a	n/a
8	CHD1	chr3:75720984-75721962	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr3:75717845-75722186	GM12892	blood:	n/a	n/a
10	CTCF	chr3:75721700-75721850	WERI-Rb-1	eye:	n/a	n/a
11	HCFC1	chr3:75721641-75721967	K562	blood:	n/a	n/a
12	MYC	chr3:75721525-75721912	H1-hESC	embryonic stem cell:	n/a	n/a
13	UBTF	chr3:75721547-75721910	K562	blood:	n/a	n/a
14	GABPA	chr3:75721603-75721998	SK-N-SH	brain:	n/a	n/a
15	MAX	chr3:75721526-75721957	SK-N-SH	brain:	n/a	n/a
16	MAX	chr3:75721123-75722029	ECC-1	luminal epithelium:	n/a	chr3:75721295-75721304
17	GABPA	chr3:75721624-75721989	Hela-S3	cervix:	n/a	n/a
18	ZBTB7A	chr3:75721649-75721829	K562	blood:	n/a	n/a
19	CTCF	chr3:75721707-75721835	LNCaP	prostate:	n/a	n/a
20	GABPA	chr3:75721579-75721941	HL-60	blood:	n/a	n/a
21	POLR2A	chr3:75721635-75721835	K562	blood:	n/a	n/a
22	POLR2A	chr3:75721054-75722088	Hela-S3	cervix:	n/a	n/a
23	TAF1	chr3:75721275-75721972	ECC-1	luminal epithelium:	n/a	n/a
24	TAF1	chr3:75721360-75722005	ECC-1	luminal epithelium:	n/a	n/a
25	CTCF	chr3:75721800-75721950	MCF-7	breast:	n/a	n/a
26	CTCF	chr3:75721680-75721830	AG10803	skin:	n/a	n/a
27	E2F6	chr3:75721492-75721889	K562	blood:	n/a	n/a
28	CTCF	chr3:75721680-75721830	HRE	kidney:	n/a	n/a
29	CTCF	chr3:75721780-75721930	HVMF	connective:	n/a	n/a
30	RAD21	chr3:75721601-75721916	SK-N-SH_RA	brain:	n/a	n/a
31	SMC3	chr3:75721213-75721870	Hela-S3	cervix:	n/a	n/a
32	MAX	chr3:75721529-75721821	K562	blood:	n/a	n/a
33	POLR2A	chr3:75721023-75721882	IMR90	lung:	n/a	n/a
34	POLR2A	chr3:75720831-75722180	SK-N-MC	brain:	n/a	n/a
35	RAD21	chr3:75721621-75721849	K562	blood:	n/a	n/a
36	MYC	chr3:75721325-75721900	NB4	blood:	n/a	n/a
37	MAX	chr3:75721272-75721937	NB4	blood:	n/a	chr3:75721295-75721304
38	HCFC1	chr3:75720681-75722627	Hela-S3	cervix:	n/a	n/a
39	ZNF143	chr3:75720757-75721832	Hela-S3	cervix:	n/a	n/a
40	CTCF	chr3:75721626-75721911	K562	blood:	n/a	n/a
41	CTCF	chr3:75721700-75721850	NB4	blood:	n/a	n/a
42	CTCF	chr3:75721720-75721870	K562	blood:	n/a	n/a
43	POLR2A	chr3:75720992-75721941	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr3:75721130-75721985	ECC-1	luminal epithelium:	n/a	chr3:75721295-75721304
45	CTCF	chr3:75721632-75721837	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chr3:75721606-75721948	IMR90	lung:	n/a	n/a
47	EGR1	chr3:75721582-75721964	H1-hESC	embryonic stem cell:	n/a	n/a
48	ELF1	chr3:75721598-75721925	K562	blood:	n/a	n/a
49	CTCF	chr3:75721720-75721870	HMF	breast:	n/a	n/a
50	CTCF	chr3:75721700-75721850	HAc	cerebellar:	n/a	n/a

No data

Variant related genes	Relation type
LINC00960	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997253	chr3:75168497-76021627	Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
2	esv2422315	chr3:75250088-75853296	Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
3	nsv428086	chr3:75346159-75914792	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
4	nsv529016	chr3:75361506-75836858	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
5	nsv432433	chr3:75377715-75774501	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
6	esv2756999	chr3:75392078-76003036	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
7	esv2754986	chr3:75392373-75735141	ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
8	esv2752017	chr3:75392373-75754704	Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
9	esv2752018	chr3:75393730-75776083	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
10	esv2755824	chr3:75394265-75734088	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
11	esv2756116	chr3:75394265-75735141	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
12	esv2763755	chr3:75396818-75792056	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
13	nsv1005724	chr3:75396818-75881261	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
14	nsv998082	chr3:75439781-75823559	ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
15	nsv1014162	chr3:75439781-75892941	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
16	esv2754995	chr3:75452819-75734088	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
17	esv2753405	chr3:75452819-75735141	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
18	esv2753976	chr3:75452819-75735141	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
19	esv1808663	chr3:75466176-75902476	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
20	nsv915897	chr3:75471836-75793433	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
21	nsv590701	chr3:75481114-75912373	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
22	nsv1011839	chr3:75507382-75733782	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1012775	chr3:75507382-75776083	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
24	nsv1008502	chr3:75507382-75787726	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
25	nsv1009064	chr3:75507382-75792044	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
26	nsv999192	chr3:75507382-75806366	Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
27	nsv999953	chr3:75507382-75881261	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
28	nsv999731	chr3:75507382-75894520	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
29	nsv1012001	chr3:75508542-75826174	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
30	nsv432456	chr3:75514110-75796710	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
31	nsv1001674	chr3:75514396-75781697	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
32	nsv1013154	chr3:75514396-75806366	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
33	nsv1001801	chr3:75527170-75792044	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
34	nsv999261	chr3:75538843-75741165	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
35	nsv1011756	chr3:75538843-75781697	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
36	nsv1002847	chr3:75538843-75792044	Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
37	esv1792564	chr3:75545172-75796728	Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
38	esv1828594	chr3:75545172-75796728	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
39	esv1840403	chr3:75545172-75796728	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
40	esv2754992	chr3:75545172-75913502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
41	nsv1010147	chr3:75546718-75788105	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
42	nsv834737	chr3:75558251-75761573	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
43	esv17725	chr3:75567240-75817199	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
44	esv1831988	chr3:75568433-75803471	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
45	nsv590711	chr3:75568433-75918869	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
46	nsv534366	chr3:75571154-75793273	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
47	nsv876983	chr3:75572199-76024339	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
48	nsv876984	chr3:75589320-75786440	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
49	esv1824644	chr3:75604469-75794567	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
50	nsv428418	chr3:75615943-75973574	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:75716600-75722400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:75716800-75722000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:75716800-75722000	ZNF genes & repeats	Pancreas	Pancrea
4	chr3:75716800-75722400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr3:75717000-75722000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:75717000-75722600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:75717200-75722000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr3:75717200-75722400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr3:75717400-75722600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr3:75718200-75722000	ZNF genes & repeats	Right Atrium	heart
11	chr3:75718600-75722000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
12	chr3:75718600-75722400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:75719000-75722000	ZNF genes & repeats	Lung	lung
14	chr3:75719000-75722600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr3:75719200-75722400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:75719200-75722600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr3:75719400-75722000	Bivalent/Poised TSS	NHLF	lung
18	chr3:75719600-75722400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:75719800-75722600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr3:75720000-75722400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:75720000-75722600	Active TSS	NHDF-Ad	bronchial
22	chr3:75720200-75722400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
23	chr3:75720400-75722000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:75720400-75722200	Bivalent/Poised TSS	Fetal Kidney	kidney
25	chr3:75720400-75722600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:75720400-75722600	Active TSS	NH-A	brain
27	chr3:75720600-75722400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:75720800-75722000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr3:75720800-75722000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
30	chr3:75720800-75722000	ZNF genes & repeats	Aorta	Aorta
31	chr3:75720800-75722000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
32	chr3:75720800-75722000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
33	chr3:75720800-75722400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:75720800-75722600	Active TSS	Muscle Satellite Cultured Cells	--
35	chr3:75721000-75722000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:75721000-75722000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
37	chr3:75721000-75722000	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr3:75721000-75722200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr3:75721000-75722400	Bivalent/Poised TSS	Fetal Lung	lung
40	chr3:75721000-75722600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:75721200-75722000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
42	chr3:75721200-75722000	Bivalent/Poised TSS	Fetal Brain Female	brain
43	chr3:75721400-75722000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:75721400-75722000	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:75721400-75722000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:75721400-75722000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
47	chr3:75721400-75722000	Active TSS	A549	lung
48	chr3:75721400-75722400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr3:75721400-75722400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
50	chr3:75721600-75722000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links