Variant report

Variant	rs7705381
Chromosome Location	chr5:60553232-60553233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10062338	0.88[AFR][1000 genomes]
rs10461467	0.81[AFR][1000 genomes]
rs10939890	0.84[AFR][1000 genomes]
rs12189426	0.84[AFR][1000 genomes]
rs12518152	0.83[AFR][1000 genomes]
rs12696979	0.84[AFR][1000 genomes]
rs12696980	0.84[AFR][1000 genomes]
rs35310874	0.84[AFR][1000 genomes]
rs4400074	0.87[AFR][1000 genomes]
rs4441832	0.83[AFR][1000 genomes]
rs4540126	0.84[AFR][1000 genomes]
rs6867268	0.87[AFR][1000 genomes]
rs6867417	0.87[AFR][1000 genomes]
rs7448844	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7705381	DEPDC1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60550400-60573400	Weak transcription	Gastric	stomach
2	chr5:60551000-60553400	Enhancers	Duodenum Mucosa	Duodenum
3	chr5:60552600-60557600	Weak transcription	Right Atrium	heart
4	chr5:60553000-60554000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:60553000-60557600	Weak transcription	Stomach Mucosa	stomach
6	chr5:60553200-60553400	Enhancers	Small Intestine	intestine
7	chr5:60553200-60553600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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