Variant report

Variant	rs7705442
Chromosome Location	chr5:115168666-115168667
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115166966..115169397-chr5:115175581..115178128,2	MCF-7	breast:
2	chr5:115166705..115169190-chr5:115172735..115175090,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145782	Chromatin interaction
ENSG00000177879	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7721361	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7705442	VIM	trans	lymphoblastoid	seeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115152800-115171200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:115153200-115169600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:115153600-115172400	Weak transcription	Fetal Brain Male	brain
4	chr5:115154400-115169600	Weak transcription	Brain Angular Gyrus	brain
5	chr5:115154600-115173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:115154800-115169200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:115155000-115169200	Weak transcription	Brain Anterior Caudate	brain
8	chr5:115155000-115169800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:115155000-115174400	Weak transcription	Fetal Heart	heart
10	chr5:115155200-115169400	Weak transcription	Brain Germinal Matrix	brain
11	chr5:115157600-115171000	Weak transcription	Thymus	Thymus
12	chr5:115159000-115169000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:115160000-115169600	Weak transcription	Psoas Muscle	Psoas
14	chr5:115160600-115169800	Weak transcription	Left Ventricle	heart
15	chr5:115161400-115169600	Weak transcription	Ovary	ovary
16	chr5:115161800-115176200	Weak transcription	Gastric	stomach
17	chr5:115162000-115174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:115162000-115176200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:115162000-115176600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:115162400-115171800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:115162600-115175600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:115162800-115170400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:115163000-115169600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:115163000-115171000	Weak transcription	Hela-S3	cervix
25	chr5:115163000-115173400	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:115163000-115176400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:115163200-115171000	Weak transcription	HSMMtube	muscle
28	chr5:115163200-115174000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:115163400-115173800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr5:115163400-115173800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr5:115163400-115173800	Strong transcription	NHDF-Ad	bronchial
32	chr5:115163400-115174200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:115163600-115171200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr5:115163600-115173200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr5:115163800-115169600	Weak transcription	Right Ventricle	heart
36	chr5:115163800-115172200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:115163800-115173000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:115163800-115173400	Strong transcription	HSMM	muscle
39	chr5:115163800-115174000	Strong transcription	Fetal Thymus	thymus
40	chr5:115163800-115174400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:115163800-115174600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:115164000-115172800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:115164000-115173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:115164000-115173600	Strong transcription	Osteobl	bone
45	chr5:115164000-115173800	Strong transcription	Dnd41	blood
46	chr5:115164000-115174000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr5:115164000-115174000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr5:115164000-115174200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr5:115164200-115169400	Weak transcription	Colonic Mucosa	Colon
50	chr5:115164200-115173400	Strong transcription	HUVEC	blood vessel

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