Variant report

Variant	rs7707036
Chromosome Location	chr5:79292899-79292900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79291981..79293995-chr5:79294051..79295740,2	K562	blood:
2	chr5:79271074..79273933-chr5:79292218..79294924,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10043116	0.91[ASN][1000 genomes]
rs10060444	0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10062607	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10066471	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10071601	0.89[ASN][1000 genomes]
rs1017996	0.80[ASN][1000 genomes]
rs1032342	0.87[JPT][hapmap]
rs11741143	0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.89[ASN][1000 genomes]
rs11748289	0.88[ASN][1000 genomes]
rs13354864	0.91[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1370987	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.90[ASN][1000 genomes]
rs1438739	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs16877389	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2291524	0.90[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2404708	0.82[ASN][1000 genomes]
rs2471104	0.90[JPT][hapmap]
rs2471105	0.87[JPT][hapmap]
rs405878	0.87[ASN][1000 genomes]
rs422690	0.85[ASN][1000 genomes]
rs6453495	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.86[YRI][hapmap];0.89[ASN][1000 genomes]
rs6453496	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6453497	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6870377	0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs6873684	0.89[ASN][1000 genomes]
rs6882768	0.91[ASN][1000 genomes]
rs6892826	0.84[ASN][1000 genomes]
rs7446065	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap]
rs7734858	0.90[ASN][1000 genomes]
rs923634	0.86[JPT][hapmap]
rs923636	0.87[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7707036	THBS4	cis	cerebellum	SCAN
rs7707036	MTX3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79287600-79311400	Weak transcription	Aorta	Aorta
2	chr5:79287800-79299800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:79288000-79297200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:79288000-79297400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:79288000-79297600	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:79288000-79298000	Weak transcription	HSMM	muscle
7	chr5:79288000-79299000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:79288000-79303200	Weak transcription	Pancreas	Pancrea
9	chr5:79288000-79311000	Weak transcription	Ovary	ovary
10	chr5:79288200-79294800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:79288200-79295600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:79288200-79296000	Weak transcription	Psoas Muscle	Psoas
13	chr5:79288200-79297200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:79288200-79310400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:79288200-79311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:79288800-79297000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:79291400-79294400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:79292000-79315600	Weak transcription	HSMMtube	muscle

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