Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:44538904..44540279-chr5:44568353..44569227,4	MCF-7	breast:
2	chr5:44567962..44569997-chr5:44691209..44694164,2	MCF-7	breast:
3	chr5:44538575..44540262-chr5:44568240..44569247,12	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10461757	0.82[ASN][1000 genomes]
rs10462078	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10941667	0.81[ASN][1000 genomes]
rs10941668	0.81[ASN][1000 genomes]
rs11950046	0.82[ASN][1000 genomes]
rs1384447	0.81[ASN][1000 genomes]
rs1384450	0.82[ASN][1000 genomes]
rs1825237	0.81[ASN][1000 genomes]
rs2128434	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs2128435	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs4329026	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4866777	0.86[ASN][1000 genomes]
rs4866902	0.85[ASN][1000 genomes]
rs4866903	0.86[ASN][1000 genomes]
rs4866904	0.86[ASN][1000 genomes]
rs4866913	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4866915	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55912972	0.90[ASN][1000 genomes]
rs62368524	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6871730	0.82[ASN][1000 genomes]
rs7448715	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs747187	0.82[ASN][1000 genomes]
rs7709753	0.82[ASN][1000 genomes]
rs7713139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729423	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8180484	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7708449	C5orf28	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44568800-44569600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr5:44569000-44570600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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