Variant report

Variant	rs7708674
Chromosome Location	chr5:60558879-60558880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10042872	0.92[ASN][1000 genomes]
rs10044874	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36198109	1.00[ASN][1000 genomes]
rs57793854	1.00[ASN][1000 genomes]
rs58939856	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882613	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6885308	0.97[ASN][1000 genomes]
rs73103614	0.92[ASN][1000 genomes]
rs9291714	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291715	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60550400-60573400	Weak transcription	Gastric	stomach
2	chr5:60556000-60570200	Weak transcription	HSMM	muscle
3	chr5:60557800-60559600	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:60558000-60566400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:60558200-60559400	Weak transcription	Stomach Mucosa	stomach
6	chr5:60558200-60559400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:60558200-60559600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:60558200-60559600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:60558200-60559600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:60558200-60559600	Enhancers	Brain Anterior Caudate	brain
11	chr5:60558200-60559600	Weak transcription	Right Atrium	heart
12	chr5:60558200-60560600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:60558400-60559400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:60558600-60559400	Enhancers	HUVEC	blood vessel
15	chr5:60558600-60560000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:60558800-60559600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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