Variant report

Variant	rs7708684
Chromosome Location	chr5:92637878-92637879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4489043	1.00[AMR][1000 genomes]
rs56050411	1.00[AMR][1000 genomes]
rs56055646	1.00[AMR][1000 genomes]
rs73772056	1.00[AMR][1000 genomes]
rs73772060	1.00[AMR][1000 genomes]
rs7723972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882381	chr5:92576494-92649716	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92630400-92638200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:92632200-92638200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92632200-92642600	Weak transcription	Hela-S3	cervix
4	chr5:92633000-92638000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:92634800-92642200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:92635800-92641200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:92635800-92641800	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:92636000-92638200	Weak transcription	Brain Germinal Matrix	brain
9	chr5:92636000-92638200	Weak transcription	Fetal Lung	lung
10	chr5:92636200-92638600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:92636400-92638200	Weak transcription	NH-A	brain
12	chr5:92636400-92638400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:92636400-92641000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:92636400-92641800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:92636400-92641800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:92636600-92638200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:92636600-92638200	Weak transcription	Brain Anterior Caudate	brain
18	chr5:92636600-92640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:92637000-92641800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:92637000-92641800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:92637400-92640200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:92637400-92641800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:92637600-92638000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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