Variant report

Variant	rs7708803
Chromosome Location	chr5:167316842-167316843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2545250	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap]
rs7379592	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167266600-167326200	Weak transcription	HMEC	breast
2	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167305800-167323600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167306400-167326600	Weak transcription	HSMM	muscle
5	chr5:167310600-167317600	Weak transcription	NHEK	skin
6	chr5:167310600-167323000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167312600-167325400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:167315200-167317000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:167315400-167317200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:167316000-167317200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:167316200-167317000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:167316200-167317000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:167316200-167317800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:167316400-167317000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167316600-167317200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:167316600-167317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:167316800-167317000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:167316800-167318400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:167316800-167325000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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