Variant report

Variant	rs7708846
Chromosome Location	chr5:124489211-124489212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10061454	1.00[ASN][1000 genomes]
rs10071085	1.00[ASN][1000 genomes]
rs10076095	1.00[ASN][1000 genomes]
rs1030953	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1030954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188573	1.00[ASN][1000 genomes]
rs13167433	1.00[ASN][1000 genomes]
rs1371375	1.00[ASN][1000 genomes]
rs1371376	1.00[ASN][1000 genomes]
rs1371377	1.00[ASN][1000 genomes]
rs1550366	1.00[ASN][1000 genomes]
rs17152319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17515224	1.00[ASN][1000 genomes]
rs4836148	1.00[ASN][1000 genomes]
rs4836150	1.00[ASN][1000 genomes]
rs4836154	1.00[ASN][1000 genomes]
rs6595580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595581	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6868056	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868078	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868875	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878640	1.00[ASN][1000 genomes]
rs6889068	1.00[ASN][1000 genomes]
rs73784301	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73785604	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449435	1.00[ASN][1000 genomes]
rs7704599	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704604	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713953	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720265	1.00[ASN][1000 genomes]
rs9327352	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124484000-124490800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:124485000-124490000	Enhancers	Fetal Lung	lung
3	chr5:124485200-124490000	Weak transcription	HSMM	muscle
4	chr5:124485400-124489600	Enhancers	Fetal Kidney	kidney
5	chr5:124485600-124489800	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:124486000-124489600	Weak transcription	NHDF-Ad	bronchial
7	chr5:124486000-124489800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:124486000-124490600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:124486400-124490000	Weak transcription	Fetal Stomach	stomach
10	chr5:124486600-124490600	Enhancers	Adipose Nuclei	Adipose
11	chr5:124486800-124490000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:124486800-124490000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:124486800-124491000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:124487800-124489600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:124487800-124490600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:124488000-124491600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:124488600-124489600	Enhancers	Dnd41	blood
18	chr5:124488600-124490200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:124488600-124490200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:124488600-124492800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:124488600-124493200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr5:124488800-124492200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:124488800-124493000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:124488800-124493000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:124488800-124496200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:124489200-124489400	Enhancers	HSMMtube	muscle

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