Variant report

Variant	rs7709577
Chromosome Location	chr5:75980367-75980368
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75979620..75981842-chr5:75984318..75987376,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11741978	1.00[ASW][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs11951337	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13181696	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568154	1.00[JPT][hapmap]
rs35919076	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271836	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215827	1.00[ASN][1000 genomes]
rs56832798	1.00[ASN][1000 genomes]
rs61128079	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7706686	1.00[ASN][1000 genomes]
rs7708326	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs979862	1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[MKK][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75943800-75986600	Weak transcription	Gastric	stomach
2	chr5:75945200-76001000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:75946400-76001000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr5:75947800-75981800	Strong transcription	Primary T cells from cord blood	blood
5	chr5:75947800-75992000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:75948000-76004600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:75949200-75986600	Weak transcription	GM12878-XiMat	blood
8	chr5:75950800-75999400	Weak transcription	Ovary	ovary
9	chr5:75951800-76001400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:75953400-75986000	Weak transcription	Spleen	Spleen
11	chr5:75955000-75980800	Weak transcription	Lung	lung
12	chr5:75955000-75996600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:75955400-75980400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr5:75956800-75984200	Weak transcription	Fetal Kidney	kidney
15	chr5:75963400-75987400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:75963800-75980600	Weak transcription	K562	blood
17	chr5:75965800-75986600	Weak transcription	Colonic Mucosa	Colon
18	chr5:75967000-75980600	Weak transcription	Pancreas	Pancrea
19	chr5:75967000-75991200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:75969800-75986600	Weak transcription	Stomach Mucosa	stomach
21	chr5:75969800-75999600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:75971200-75991000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:75971400-75986600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:75971400-75991200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:75973000-75980800	Weak transcription	Small Intestine	intestine
26	chr5:75973200-75989600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr5:75973800-75991400	Weak transcription	Fetal Thymus	thymus
28	chr5:75974200-75984800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:75975000-75989000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:75975400-75980600	Weak transcription	NHLF	lung
31	chr5:75975400-75986200	Weak transcription	Fetal Stomach	stomach
32	chr5:75975600-75980800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:75975600-75999600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:75976600-75980800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr5:75977000-75981800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:75977600-75987000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:75977600-75991000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr5:75977600-76003400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:75978000-75980400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:75978000-75980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:75978000-75985600	Weak transcription	Aorta	Aorta
42	chr5:75978400-75981600	Enhancers	Fetal Intestine Small	intestine
43	chr5:75978400-75981800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:75978400-75984400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:75978400-75989600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr5:75978400-76001600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr5:75978400-76004400	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr5:75978600-75980800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:75978600-76003400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr5:75978800-75980400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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