Variant report

Variant	rs7710476
Chromosome Location	chr5:96417457-96417458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17087366	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs58387311	1.00[AFR][1000 genomes]
rs60560086	0.91[AFR][1000 genomes]
rs60834647	0.81[AFR][1000 genomes]
rs7703880	0.84[AFR][1000 genomes]
rs7706524	1.00[AFR][1000 genomes]
rs7707175	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7723994	1.00[AFR][1000 genomes]
rs7727739	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96411400-96417600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:96414600-96421400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:96415400-96417600	Weak transcription	GM12878-XiMat	blood
4	chr5:96415400-96422800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:96415600-96417600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:96416400-96419200	Enhancers	Primary B cells from cord blood	blood
7	chr5:96416800-96418200	Enhancers	Primary T cells from cord blood	blood
8	chr5:96417000-96417600	Enhancers	Dnd41	blood
9	chr5:96417200-96417600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:96417200-96418200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:96417400-96417800	Enhancers	Stomach Mucosa	stomach
12	chr5:96417400-96418000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:96417400-96418200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:96417400-96418200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr5:96417400-96419000	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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