Variant report

Variant	rs7710706
Chromosome Location	chr5:74343769-74343770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74334981..74336782-chr5:74342190..74344248,2	MCF-7	breast:
2	chr5:74343721..74346711-chr5:74348510..74350046,2	MCF-7	breast:
3	chr5:74343645..74345260-chr5:74345382..74347449,2	K562	blood:
4	chr5:74341045..74343910-chr5:74344011..74347485,4	MCF-7	breast:
5	chr5:74331704..74333232-chr5:74343101..74344687,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD31-1	chr5:74343722-74343862	NONHSAT102195

Variant related genes	Relation type
ENSG00000250889	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1835096	chr5:74336883-74356857	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv275446	chr5:74339574-74345369	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74317600-74344200	Weak transcription	Ovary	ovary
2	chr5:74328600-74345600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:74329200-74346800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:74329800-74344400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:74330000-74344400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:74330400-74344200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:74330600-74345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:74330600-74348000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:74331400-74345400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:74331400-74345600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:74331600-74344000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:74331600-74347000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:74333200-74344000	Weak transcription	Osteobl	bone
14	chr5:74333200-74346000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:74333400-74343800	Weak transcription	NH-A	brain
16	chr5:74333400-74344000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:74333400-74344000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:74334200-74344000	Weak transcription	Stomach Mucosa	stomach
19	chr5:74336600-74345600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:74337000-74343800	Strong transcription	Duodenum Mucosa	Duodenum
21	chr5:74337200-74344000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:74337200-74344200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:74337600-74348200	Weak transcription	Left Ventricle	heart
24	chr5:74338400-74343800	Weak transcription	Fetal Brain Female	brain
25	chr5:74338600-74343800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:74338600-74348000	Weak transcription	Psoas Muscle	Psoas
27	chr5:74339000-74347000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:74339200-74345400	Weak transcription	Colonic Mucosa	Colon
29	chr5:74340200-74346000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:74340600-74343800	Weak transcription	Brain Anterior Caudate	brain
31	chr5:74340600-74343800	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:74340600-74343800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:74340600-74344200	Weak transcription	NHLF	lung
34	chr5:74340600-74345400	Weak transcription	Fetal Stomach	stomach
35	chr5:74340600-74347400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr5:74341000-74346400	Weak transcription	Small Intestine	intestine
37	chr5:74341200-74344000	Strong transcription	Thymus	Thymus
38	chr5:74341200-74345400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr5:74341400-74344000	Weak transcription	GM12878-XiMat	blood
40	chr5:74341400-74344200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr5:74341400-74347400	Enhancers	HMEC	breast
42	chr5:74341800-74344200	Weak transcription	Adipose Nuclei	Adipose
43	chr5:74342000-74346000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:74342200-74343800	Strong transcription	Primary T cells from cord blood	blood
45	chr5:74342200-74344600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:74342200-74345800	Weak transcription	Lung	lung
47	chr5:74342200-74347800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:74342400-74343800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr5:74342400-74344200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr5:74342400-74344200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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