Variant report

Variant	rs7711573
Chromosome Location	chr5:88568789-88568790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12653655	0.95[ASN][1000 genomes]
rs12654335	1.00[ASN][1000 genomes]
rs12657575	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12659254	0.88[ASN][1000 genomes]
rs1422088	0.94[ASN][1000 genomes]
rs1833588	1.00[ASN][1000 genomes]
rs34324795	0.94[ASN][1000 genomes]
rs60081637	0.94[ASN][1000 genomes]
rs60218625	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532159	chr5:88016214-88783092	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv529543	chr5:88348147-88783092	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv830387	chr5:88547862-88682442	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88561400-88575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:88562400-88571800	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:88562600-88569400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:88562800-88569400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:88564800-88569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:88565200-88575200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:88566600-88569800	Enhancers	HSMM	muscle
8	chr5:88566600-88570200	Enhancers	HSMMtube	muscle
9	chr5:88566800-88569400	Enhancers	Fetal Muscle Leg	muscle
10	chr5:88567600-88572800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:88567800-88569200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:88567800-88569600	Enhancers	Primary B cells from cord blood	blood
13	chr5:88568000-88572200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:88568000-88575200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:88568200-88569800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:88568200-88571400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:88568600-88569000	Weak transcription	K562	blood
18	chr5:88568600-88569600	Enhancers	GM12878-XiMat	blood
19	chr5:88568600-88575200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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