Variant report

Variant	rs7711900
Chromosome Location	chr5:108036773-108036774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11958060	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179785	0.88[ASN][1000 genomes]
rs1396443	0.88[ASN][1000 genomes]
rs1472917	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs1472918	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs2048212	0.88[ASN][1000 genomes]
rs2174973	0.91[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs2174974	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4478364	0.84[ASN][1000 genomes]
rs4587121	0.87[ASN][1000 genomes]
rs6887824	0.87[ASN][1000 genomes]
rs7445987	0.88[ASN][1000 genomes]
rs7712018	0.88[ASN][1000 genomes]
rs9326745	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv980959	chr5:108023194-108043010	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108036200-108037000	Enhancers	Small Intestine	intestine
2	chr5:108036400-108037000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:108036600-108037000	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:108036600-108037000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:108036600-108037000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:108036600-108037000	Enhancers	Adipose Nuclei	Adipose
7	chr5:108036600-108037000	Enhancers	Brain Angular Gyrus	brain
8	chr5:108036600-108037000	Enhancers	Brain Substantia Nigra	brain
9	chr5:108036600-108037000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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