Variant report

Variant	rs771200
Chromosome Location	chr1:150968858-150968859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150938225..150939767-chr1:150968259..150969820,2	K562	blood:
2	chr1:150953020..150957735-chr1:150963848..150969418,6	K562	blood:
3	chr1:150937219..150939370-chr1:150968361..150970746,2	MCF-7	breast:
4	chr1:150951896..150952651-chr1:150968049..150969077,3	MCF-7	breast:
5	chr1:150951678..150952589-chr1:150967817..150969035,6	MCF-7	breast:
6	chr1:150944409..150948293-chr1:150968315..150970666,3	MCF-7	breast:
7	chr1:150967937..150969769-chr1:150986462..150989877,3	K562	blood:
8	chr1:150951645..150956254-chr1:150963775..150970753,11	MCF-7	breast:
9	chr1:150550679..150553403-chr1:150967075..150968998,2	MCF-7	breast:
10	chr1:150951592..150952599-chr1:150967788..150968979,9	K562	blood:
11	chr1:150948646..150951124-chr1:150967629..150969757,2	K562	blood:
12	chr1:150960670..150962808-chr1:150967016..150969330,2	K562	blood:
13	chr1:150539336..150540965-chr1:150966492..150969394,2	K562	blood:
14	chr1:150964621..150967260-chr1:150968064..150969856,2	MCF-7	breast:
15	chr1:150967045..150969733-chr1:151032331..151034733,2	K562	blood:
16	chr1:150963599..150966147-chr1:150967047..150969474,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259357	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000231073	Chromatin interaction
ENSG00000143412	Chromatin interaction
ENSG00000264508	Chromatin interaction
ENSG00000143418	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11204755	0.89[EUR][1000 genomes]
rs12073630	0.89[EUR][1000 genomes]
rs12074446	0.89[EUR][1000 genomes]
rs12075317	0.89[EUR][1000 genomes]
rs12078033	0.89[EUR][1000 genomes]
rs12079970	0.88[EUR][1000 genomes]
rs12096801	0.91[EUR][1000 genomes]
rs28527376	0.91[EUR][1000 genomes]
rs2925740	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41310885	0.91[EUR][1000 genomes]
rs61819176	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv522317	chr1:150933723-150974162	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
6	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150954200-150969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:150955000-150969400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:150955400-150969400	Weak transcription	Gastric	stomach
4	chr1:150955400-150970400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:150955400-150978800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:150956200-150969400	Weak transcription	Fetal Intestine Large	intestine
7	chr1:150959000-150969400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:150961000-150969400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:150961400-150969400	Weak transcription	Colonic Mucosa	Colon
10	chr1:150961400-150969600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:150961600-150969400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:150961800-150978200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:150963400-150969400	Weak transcription	Esophagus	oesophagus
14	chr1:150963800-150969600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:150964400-150969400	Weak transcription	Lung	lung
16	chr1:150965600-150969400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:150965800-150969600	Weak transcription	Primary B cells from cord blood	blood
18	chr1:150965800-150970200	Weak transcription	HMEC	breast
19	chr1:150966400-150969400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:150966600-150969400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:150966600-150971400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:150966800-150969400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:150967000-150969400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:150967000-150971400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:150967200-150969400	Weak transcription	Right Ventricle	heart
26	chr1:150967400-150969400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:150967400-150969400	Weak transcription	Fetal Brain Female	brain
28	chr1:150967400-150973600	Strong transcription	Primary T cells from cord blood	blood
29	chr1:150967600-150969200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:150967600-150969400	Weak transcription	Aorta	Aorta
31	chr1:150967600-150970000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr1:150967600-150971200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:150967600-150971400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr1:150967600-150973600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr1:150967600-150974200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:150967600-150975200	Strong transcription	Fetal Intestine Small	intestine
37	chr1:150967600-150975600	Strong transcription	Fetal Stomach	stomach
38	chr1:150967600-150978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:150967800-150969200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr1:150968000-150969000	Genic enhancers	Brain Hippocampus Middle	brain
41	chr1:150968000-150969600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:150968000-150975200	Weak transcription	Small Intestine	intestine
43	chr1:150968200-150969000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:150968200-150969000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr1:150968200-150969000	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr1:150968200-150977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:150968400-150969000	Weak transcription	Spleen	Spleen
48	chr1:150968400-150969200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:150968400-150969400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr1:150968400-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links