Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126560722..126563316-chr5:126569257..126571636,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10519949	1.00[CEU][hapmap]
rs12652019	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12652963	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12652982	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12654313	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654455	1.00[CEU][hapmap]
rs12655913	1.00[CEU][hapmap]
rs12655952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659381	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12659424	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs17684438	1.00[CEU][hapmap]
rs17684525	1.00[CEU][hapmap]
rs17762544	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17762857	1.00[CEU][hapmap]
rs17762863	1.00[CEU][hapmap]
rs17839701	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs3812058	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs3812059	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs6862045	1.00[CEU][hapmap]
rs73785535	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73785536	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73785537	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728190	1.00[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126559400-126564400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:126559400-126564400	Weak transcription	GM12878-XiMat	blood
3	chr5:126560400-126564400	Weak transcription	Brain Substantia Nigra	brain

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