Variant report
| Variant | rs7712713 |
|---|---|
| Chromosome Location | chr5:111900828-111900829 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:111900163..111902233-chr5:111907010..111909080,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs12513537 | 0.92[ASN][1000 genomes] |
| rs12513566 | 1.00[ASN][1000 genomes] |
| rs12514125 | 1.00[ASN][1000 genomes] |
| rs12515776 | 0.92[ASN][1000 genomes] |
| rs12519317 | 1.00[ASN][1000 genomes] |
| rs12520143 | 1.00[ASN][1000 genomes] |
| rs12520993 | 0.92[ASN][1000 genomes] |
| rs12521453 | 1.00[ASN][1000 genomes] |
| rs12521636 | 1.00[ASN][1000 genomes] |
| rs12521647 | 1.00[ASN][1000 genomes] |
| rs12522184 | 1.00[ASN][1000 genomes] |
| rs13156511 | 1.00[ASN][1000 genomes] |
| rs13175006 | 1.00[ASN][1000 genomes] |
| rs13184169 | 1.00[ASN][1000 genomes] |
| rs13189644 | 0.92[ASN][1000 genomes] |
| rs34102425 | 0.92[ASN][1000 genomes] |
| rs34313350 | 0.88[ASN][1000 genomes] |
| rs34318257 | 1.00[ASN][1000 genomes] |
| rs34450595 | 1.00[ASN][1000 genomes] |
| rs34522168 | 0.96[ASN][1000 genomes] |
| rs34662893 | 0.92[ASN][1000 genomes] |
| rs34844054 | 1.00[ASN][1000 genomes] |
| rs35060773 | 1.00[ASN][1000 genomes] |
| rs35205874 | 0.92[ASN][1000 genomes] |
| rs35309669 | 0.92[ASN][1000 genomes] |
| rs35416462 | 1.00[ASN][1000 genomes] |
| rs35525941 | 1.00[ASN][1000 genomes] |
| rs35857532 | 1.00[ASN][1000 genomes] |
| rs36073750 | 0.92[ASN][1000 genomes] |
| rs4270741 | 1.00[ASN][1000 genomes] |
| rs4455609 | 1.00[ASN][1000 genomes] |
| rs4957648 | 0.92[ASN][1000 genomes] |
| rs4957649 | 1.00[ASN][1000 genomes] |
| rs4958057 | 1.00[ASN][1000 genomes] |
| rs4958058 | 1.00[ASN][1000 genomes] |
| rs4958059 | 1.00[ASN][1000 genomes] |
| rs4958060 | 1.00[ASN][1000 genomes] |
| rs4958061 | 1.00[ASN][1000 genomes] |
| rs4958062 | 0.92[ASN][1000 genomes] |
| rs62363752 | 0.92[ASN][1000 genomes] |
| rs62363754 | 1.00[ASN][1000 genomes] |
| rs62365777 | 1.00[ASN][1000 genomes] |
| rs62365780 | 1.00[ASN][1000 genomes] |
| rs6861057 | 0.93[EUR][1000 genomes] |
| rs6867472 | 0.92[ASN][1000 genomes] |
| rs6867731 | 0.92[ASN][1000 genomes] |
| rs6868091 | 0.92[ASN][1000 genomes] |
| rs71579190 | 1.00[ASN][1000 genomes] |
| rs7446737 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599368 | chr5:111399885-112032675 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111898400-111909000 | Weak transcription | Fetal Heart | heart |
| 2 | chr5:111899600-111904200 | Weak transcription | Aorta | Aorta |
