Variant report

Variant	rs77130543
Chromosome Location	chr5:177066591-177066592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916108	chr5:176688459-177078723	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
3	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3388835	chr5:177066446-177068444	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177046600-177068400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:177046600-177069200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:177046600-177069600	Weak transcription	Esophagus	oesophagus
4	chr5:177046800-177084000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:177047000-177079000	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:177047200-177070800	Weak transcription	Pancreas	Pancrea
7	chr5:177047400-177075000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:177047800-177068200	Weak transcription	Fetal Intestine Large	intestine
9	chr5:177047800-177069000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:177047800-177080200	Weak transcription	Primary B cells from cord blood	blood
11	chr5:177048000-177069000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:177048400-177066800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:177048800-177083600	Weak transcription	Fetal Lung	lung
14	chr5:177051600-177069000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:177051800-177080200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:177052000-177083200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:177052000-177085600	Weak transcription	Gastric	stomach
18	chr5:177052200-177070000	Weak transcription	Primary T cells from cord blood	blood
19	chr5:177052800-177068200	Weak transcription	Spleen	Spleen
20	chr5:177052800-177070200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:177052800-177070200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:177052800-177070400	Weak transcription	Adipose Nuclei	Adipose
23	chr5:177052800-177076400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr5:177054000-177084600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr5:177054200-177066600	Weak transcription	Dnd41	blood
26	chr5:177054200-177069200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr5:177054200-177070000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:177054400-177068200	Weak transcription	Ovary	ovary
29	chr5:177054400-177068200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:177054400-177096000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr5:177059000-177068400	Weak transcription	Aorta	Aorta
32	chr5:177059400-177067600	Weak transcription	Thymus	Thymus
33	chr5:177059600-177068200	Weak transcription	Lung	lung
34	chr5:177065200-177067000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:177065800-177066600	ZNF genes & repeats	Fetal Stomach	stomach
36	chr5:177065800-177067000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:177065800-177067000	ZNF genes & repeats	Fetal Brain Female	brain
38	chr5:177066000-177067200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:177066200-177067000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr5:177066400-177066800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:177066400-177066800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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