Variant report

Variant	rs771316
Chromosome Location	chr2:7098325-7098326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7097520..7099257-chr2:7101645..7103417,2	MCF-7	breast:
2	chr2:7092876..7095990-chr2:7096589..7100919,3	K562	blood:
3	chr2:7097968..7100003-chr2:7109143..7111034,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12477614	0.96[ASN][1000 genomes]
rs771313	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs771315	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833326	chr2:6985027-7142564	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv2598	chr2:7088737-7133415	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7078200-7110800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:7079000-7113400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:7081400-7112200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:7082600-7100800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:7083800-7129600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:7084200-7122200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr2:7084400-7100400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:7084400-7100600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:7084400-7109600	Weak transcription	Fetal Thymus	thymus
10	chr2:7084400-7110800	Weak transcription	Esophagus	oesophagus
11	chr2:7084600-7105200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:7084600-7112800	Weak transcription	Thymus	Thymus
13	chr2:7085000-7120200	Weak transcription	Fetal Intestine Small	intestine
14	chr2:7085400-7110400	Weak transcription	Brain Germinal Matrix	brain
15	chr2:7085600-7099600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr2:7086200-7098400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:7086200-7100600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:7087600-7102800	Strong transcription	Dnd41	blood
19	chr2:7089000-7098800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:7089200-7099000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:7089200-7100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:7089200-7100600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:7089200-7100600	Weak transcription	Fetal Stomach	stomach
24	chr2:7089600-7100400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:7092400-7100600	Weak transcription	NHDF-Ad	bronchial
26	chr2:7093600-7099600	Enhancers	Brain Anterior Caudate	brain
27	chr2:7093600-7102600	Enhancers	Brain Angular Gyrus	brain
28	chr2:7093800-7102400	Enhancers	Brain Hippocampus Middle	brain
29	chr2:7094600-7098800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:7094600-7102000	Enhancers	Brain Cingulate Gyrus	brain
31	chr2:7094600-7102400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr2:7094600-7102400	Enhancers	Fetal Brain Male	brain
33	chr2:7095200-7101800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:7095400-7098400	Enhancers	Gastric	stomach
35	chr2:7095400-7099400	Enhancers	Left Ventricle	heart
36	chr2:7095400-7101000	Enhancers	Right Atrium	heart
37	chr2:7095600-7099200	Enhancers	Fetal Heart	heart
38	chr2:7095600-7099400	Strong transcription	Primary T cells from cord blood	blood
39	chr2:7095800-7098800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr2:7095800-7100000	Enhancers	Fetal Brain Female	brain
41	chr2:7095800-7100000	Enhancers	Right Ventricle	heart
42	chr2:7096000-7098600	Strong transcription	Primary hematopoietic stem cells	blood
43	chr2:7096000-7099800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:7096000-7100600	Weak transcription	Ovary	ovary
45	chr2:7096000-7100800	Weak transcription	Aorta	Aorta
46	chr2:7096400-7099000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr2:7096400-7100400	Weak transcription	Colon Smooth Muscle	Colon
48	chr2:7096600-7098600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:7096600-7100800	Weak transcription	NH-A	brain
50	chr2:7096800-7100600	Weak transcription	Rectal Mucosa Donor 31	rectum

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