Variant report

Variant	rs7713374
Chromosome Location	chr5:101583687-101583688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10479123	1.00[AFR][1000 genomes]
rs2400567	1.00[AFR][1000 genomes]
rs7715682	1.00[YRI][hapmap]
rs7734322	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101566000-101584400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:101567400-101585000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:101568200-101599000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:101568800-101584800	Weak transcription	Fetal Intestine Large	intestine
5	chr5:101568800-101598200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:101570200-101599600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:101570800-101587800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:101578200-101585000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:101578200-101598200	Weak transcription	Pancreas	Pancrea
10	chr5:101579200-101598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:101579800-101598600	Weak transcription	Lung	lung
12	chr5:101580000-101604400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:101581600-101584000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:101582200-101585200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:101583000-101591400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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