Variant report

Variant	rs7713409
Chromosome Location	chr5:40964595-40964596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1061443	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs11953397	0.89[YRI][hapmap]
rs12188487	0.89[ASN][1000 genomes]
rs12188500	0.89[ASN][1000 genomes]
rs12655049	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187430	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16870568	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs1901167	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34641824	0.89[ASN][1000 genomes]
rs3805215	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357072	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72749584	0.89[ASN][1000 genomes]
rs7713884	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv823055	chr5:40875708-41004839	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv35077	chr5:40875843-41000671	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv880796	chr5:40934832-40985604	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv517061	chr5:40964557-40964595	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40931200-40992200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:40931800-40991000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:40954800-40968000	Strong transcription	Ovary	ovary
4	chr5:40955200-40967600	Strong transcription	Fetal Lung	lung
5	chr5:40959800-40966000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:40959800-40976400	Weak transcription	Fetal Stomach	stomach
7	chr5:40959800-40980800	Weak transcription	Lung	lung
8	chr5:40960000-40967000	Weak transcription	Fetal Intestine Small	intestine
9	chr5:40960000-40967200	Weak transcription	Fetal Intestine Large	intestine
10	chr5:40960000-40973200	Weak transcription	Pancreas	Pancrea
11	chr5:40960000-40977000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:40960400-40967800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:40960400-40989600	Weak transcription	Left Ventricle	heart
14	chr5:40961400-40981400	Weak transcription	Spleen	Spleen
15	chr5:40962400-40966600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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