Variant report

Variant	rs7713460
Chromosome Location	chr5:95138192-95138193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95136480..95139124-chr5:95140917..95143834,2	K562	blood:
2	chr5:95137694..95139720-chr5:95158837..95160612,2	MCF-7	breast:
3	chr5:95137350..95139988-chr5:95179916..95183018,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10476659	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3777212	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3822754	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6890561	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9314155	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95115400-95138600	Weak transcription	Gastric	stomach
2	chr5:95115400-95139000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:95115400-95157000	Weak transcription	Aorta	Aorta
4	chr5:95117200-95143000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:95117200-95143200	Weak transcription	Primary T cells from cord blood	blood
6	chr5:95117200-95143400	Weak transcription	Thymus	Thymus
7	chr5:95117400-95144200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:95120800-95138600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:95120800-95138600	Weak transcription	Psoas Muscle	Psoas
10	chr5:95120800-95143400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:95121000-95156800	Weak transcription	Brain Germinal Matrix	brain
12	chr5:95124400-95138600	Weak transcription	Right Ventricle	heart
13	chr5:95124400-95143800	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:95124600-95139600	Weak transcription	Fetal Lung	lung
15	chr5:95124600-95143800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:95124600-95144000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:95124600-95154400	Weak transcription	Brain Angular Gyrus	brain
18	chr5:95125000-95154400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:95125600-95140800	Weak transcription	GM12878-XiMat	blood
20	chr5:95126400-95143600	Weak transcription	Dnd41	blood
21	chr5:95126800-95139000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:95127800-95149200	Weak transcription	Fetal Brain Female	brain
23	chr5:95128000-95143600	Weak transcription	Spleen	Spleen
24	chr5:95128000-95143800	Weak transcription	Lung	lung
25	chr5:95129800-95138800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:95129800-95140200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:95129800-95143600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr5:95130000-95143600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr5:95130000-95145000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:95130000-95145000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr5:95130000-95157400	Weak transcription	Ovary	ovary
32	chr5:95130200-95138800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr5:95130200-95140800	Weak transcription	Brain Hippocampus Middle	brain
34	chr5:95130200-95143600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:95130200-95143600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:95130200-95143600	Weak transcription	Hela-S3	cervix
37	chr5:95130400-95139000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:95130400-95139000	Weak transcription	NHDF-Ad	bronchial
39	chr5:95130400-95146000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:95130600-95138400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:95131600-95138600	Weak transcription	NH-A	brain
42	chr5:95132800-95143600	Weak transcription	Fetal Stomach	stomach
43	chr5:95132800-95144200	Weak transcription	NHLF	lung
44	chr5:95133000-95139000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:95133200-95138600	Enhancers	HepG2	liver
46	chr5:95133400-95138600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:95133400-95138600	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:95133400-95139000	Weak transcription	HSMMtube	muscle
49	chr5:95133400-95139000	Weak transcription	Osteobl	bone
50	chr5:95133400-95142800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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