Variant report

Variant	rs7713861
Chromosome Location	chr5:57155011-57155012
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17691299	0.94[AFR][1000 genomes]
rs17691381	0.94[AFR][1000 genomes]
rs17747913	0.94[AFR][1000 genomes]
rs7711025	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57151200-57158200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57151400-57160000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:57152600-57155800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57153800-57155400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57154000-57155200	Weak transcription	NHEK	skin
6	chr5:57154000-57157200	Weak transcription	HMEC	breast
7	chr5:57154400-57155600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:57154400-57155600	Enhancers	HSMM	muscle
9	chr5:57154600-57155200	Enhancers	Fetal Lung	lung
10	chr5:57154600-57155400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:57154600-57155400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:57154800-57155600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:57154800-57155600	Enhancers	Placenta	Placenta
14	chr5:57155000-57156000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:57155000-57157600	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links