Variant report

Variant	rs77139221
Chromosome Location	chr5:74173798-74173799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv968210	chr5:74173768-74181141	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74171800-74174800	Enhancers	Liver	Liver
2	chr5:74172000-74173800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:74172200-74173800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:74172200-74174000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:74172400-74173800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:74172400-74173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:74172400-74174000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:74172600-74179200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:74173000-74173800	Enhancers	Brain Germinal Matrix	brain
10	chr5:74173000-74174000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:74173000-74174400	Flanking Active TSS	HepG2	liver
12	chr5:74173200-74174000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:74173200-74174400	Weak transcription	Brain Anterior Caudate	brain
14	chr5:74173200-74174600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:74173200-74174800	Enhancers	Brain Hippocampus Middle	brain
16	chr5:74173400-74173800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:74173400-74174600	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:74173400-74175200	Enhancers	Brain Substantia Nigra	brain
19	chr5:74173600-74173800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:74173600-74173800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:74173600-74173800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:74173600-74174000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:74173600-74174000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:74173600-74174000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:74173600-74174200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:74173600-74174800	Enhancers	Brain Angular Gyrus	brain
27	chr5:74173600-74178400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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