Variant report

Variant	rs7713923
Chromosome Location	chr5:41205488-41205489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2018813	0.83[AFR][1000 genomes]
rs7714193	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714388	1.00[AMR][1000 genomes]
rs7714650	0.88[AFR][1000 genomes]
rs9763598	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41204800-41206000	ZNF genes & repeats	Fetal Intestine Large	intestine
2	chr5:41204800-41206200	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr5:41205400-41206000	ZNF genes & repeats	Pancreas	Pancrea
4	chr5:41205400-41206200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:41205400-41206200	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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