Variant report

Variant	rs7714729
Chromosome Location	chr5:7751407-7751408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:46129656..46131375-chr5:7749833..7752197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124151	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11134255	1.00[EUR][1000 genomes]
rs11960468	1.00[EUR][1000 genomes]
rs16879182	1.00[EUR][1000 genomes]
rs16879196	1.00[EUR][1000 genomes]
rs16879215	1.00[EUR][1000 genomes]
rs326155	1.00[EUR][1000 genomes]
rs326158	1.00[EUR][1000 genomes]
rs326161	1.00[EUR][1000 genomes]
rs326163	1.00[EUR][1000 genomes]
rs326165	1.00[EUR][1000 genomes]
rs35209447	1.00[EUR][1000 genomes]
rs6885060	1.00[EUR][1000 genomes]
rs9313202	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1024268	chr5:7707047-7821303	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7705800-7755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:7711000-7783600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:7719000-7768800	Weak transcription	Brain Anterior Caudate	brain
4	chr5:7719000-7785000	Weak transcription	Aorta	Aorta
5	chr5:7720400-7757400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:7728000-7757800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:7741800-7763800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:7745200-7756200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:7745400-7759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:7746200-7755600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:7746400-7755000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:7746400-7756200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:7746400-7757000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:7746400-7757600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:7747800-7757600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:7747800-7766400	Weak transcription	Fetal Brain Female	brain
17	chr5:7748400-7755000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:7748400-7757600	Weak transcription	Fetal Stomach	stomach
19	chr5:7749200-7755000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:7749200-7771000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:7750200-7757800	Weak transcription	Brain Inferior Temporal Lobe	brain

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