Variant report

Variant	rs7715627
Chromosome Location	chr5:40864871-40864872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10037936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10059556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs184436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs323556	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs408238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs442869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs837382	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs837385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases
2	esv3444044	chr5:40860244-40888483	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40852800-40865200	Weak transcription	Pancreas	Pancrea
2	chr5:40856200-40871400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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