Variant report

Variant	rs7715636
Chromosome Location	chr5:167721181-167721182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:167719706..167722622-chr5:167894559..167896628,2	MCF-7	breast:
2	chr5:167718914..167721325-chr5:167913985..167916640,3	MCF-7	breast:
3	chr5:167718924..167721617-chr5:168004476..168006374,2	MCF-7	breast:
4	chr5:167720165..167722660-chr5:167828436..167831193,2	MCF-7	breast:
5	chr5:167720610..167721433-chr5:167743019..167743616,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113643	Chromatin interaction
ENSG00000120137	Chromatin interaction
ENSG00000113645	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10059667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10475868	1.00[ASN][1000 genomes]
rs11950961	1.00[ASN][1000 genomes]
rs13360333	1.00[ASN][1000 genomes]
rs2569038	1.00[ASN][1000 genomes]
rs61686441	1.00[ASN][1000 genomes]
rs7737955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167719200-167722000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:167719200-167722800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:167719600-167722000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:167719600-167722000	Weak transcription	Ovary	ovary
5	chr5:167720000-167721400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr5:167720000-167721400	Flanking Active TSS	Fetal Brain Female	brain
7	chr5:167720000-167722000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:167720000-167722000	Weak transcription	Osteobl	bone
9	chr5:167720200-167721400	Enhancers	HepG2	liver
10	chr5:167720200-167721600	Transcr. at gene 5' and 3'	A549	lung
11	chr5:167720200-167722200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:167720200-167722400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:167720200-167722600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:167720400-167721200	Active TSS	Esophagus	oesophagus
15	chr5:167720400-167721800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:167720400-167722000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:167720400-167722000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:167720400-167722000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:167720400-167722000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:167720400-167722000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:167720400-167722000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:167720400-167722000	Weak transcription	Gastric	stomach
23	chr5:167720400-167722000	Weak transcription	NHDF-Ad	bronchial
24	chr5:167720400-167722200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:167720400-167722200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:167720400-167722200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:167720400-167722200	Weak transcription	NH-A	brain
28	chr5:167720400-167722800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:167720400-167723000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:167720400-167723200	Enhancers	Fetal Brain Male	brain
31	chr5:167720400-167724200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr5:167720400-167726000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:167720600-167721200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr5:167720600-167721200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr5:167720600-167721400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:167720600-167722000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:167720600-167722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:167720600-167722200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr5:167720600-167722600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:167720600-167727000	Weak transcription	GM12878-XiMat	blood
41	chr5:167720800-167721200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:167720800-167721200	Enhancers	Brain Anterior Caudate	brain
43	chr5:167720800-167721200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
44	chr5:167720800-167722000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr5:167720800-167722000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:167720800-167722000	Weak transcription	Stomach Mucosa	stomach
47	chr5:167720800-167722000	Weak transcription	HMEC	breast
48	chr5:167720800-167722200	Weak transcription	Fetal Intestine Large	intestine
49	chr5:167720800-167722800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr5:167720800-167722800	Genic enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links