Variant report

Variant	rs771571
Chromosome Location	chr3:101656427-101656428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101654323..101656814-chr3:101941741..101943329,2	MCF-7	breast:
2	chr3:101655492..101658302-chr3:101660937..101663877,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2943301	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101643800-101658400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101653200-101659200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:101654000-101659200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:101654000-101659200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:101654000-101660200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:101654000-101661400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:101654000-101662800	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:101654200-101657200	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:101654200-101659000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:101654200-101659400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:101654200-101662200	Enhancers	Primary T cells from cord blood	blood
12	chr3:101654400-101656800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:101654400-101657000	Enhancers	Primary B cells from cord blood	blood
14	chr3:101654400-101659200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:101654800-101657400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:101655000-101656600	Enhancers	HMEC	breast
17	chr3:101655000-101658600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:101655000-101658600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:101655200-101656800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:101655400-101659000	Enhancers	HUVEC	blood vessel
21	chr3:101655400-101659600	Weak transcription	Fetal Thymus	thymus
22	chr3:101655400-101660000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:101655600-101659400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:101655600-101660000	Enhancers	Hela-S3	cervix
25	chr3:101655600-101660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:101655800-101657000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:101655800-101657200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:101655800-101657600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr3:101655800-101659400	Enhancers	HSMMtube	muscle
30	chr3:101656000-101656600	Weak transcription	K562	blood
31	chr3:101656000-101656800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr3:101656000-101657000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:101656000-101657000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:101656000-101657000	Weak transcription	Stomach Mucosa	stomach
35	chr3:101656000-101657200	Weak transcription	NHLF	lung
36	chr3:101656000-101658000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr3:101656000-101658600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:101656000-101658600	Enhancers	HSMM	muscle
39	chr3:101656000-101658800	Enhancers	NHDF-Ad	bronchial
40	chr3:101656000-101659200	Enhancers	Osteobl	bone
41	chr3:101656000-101659400	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr3:101656000-101659600	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr3:101656000-101659600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr3:101656000-101661400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr3:101656000-101661600	Enhancers	Fetal Heart	heart
46	chr3:101656000-101662400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:101656000-101662400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr3:101656200-101656600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:101656200-101657400	Weak transcription	NH-A	brain
50	chr3:101656200-101657600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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