Variant report

Variant	rs7716012
Chromosome Location	chr5:167393461-167393462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7702526	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167379400-167394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:167380600-167394800	Weak transcription	HSMM	muscle
3	chr5:167380800-167394200	Weak transcription	NHEK	skin
4	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
6	chr5:167388000-167396800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167388200-167394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:167388200-167395000	Weak transcription	Left Ventricle	heart
9	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:167389200-167394000	Weak transcription	Fetal Lung	lung
11	chr5:167391600-167393600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:167391800-167394200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:167391800-167394800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:167391800-167394800	Weak transcription	NH-A	brain
16	chr5:167392400-167394200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:167392600-167393600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:167392800-167396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:167393000-167395200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:167393200-167393600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:167393200-167394600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:167393200-167394800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:167393200-167395000	Enhancers	Brain Germinal Matrix	brain
24	chr5:167393400-167393800	Weak transcription	Right Ventricle	heart
25	chr5:167393400-167394800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:167393400-167394800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:167393400-167395200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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