Variant report

Variant	rs7716261
Chromosome Location	chr5:58437980-58437981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10064744	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10070295	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10073292	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12516263	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889248	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16889254	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16889258	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1961	0.97[ASN][1000 genomes]
rs62356728	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868963	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6869149	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6881137	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6886854	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6892369	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7714707	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7735375	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9292191	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv881702	chr5:58432413-58474854	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58424000-58439800	Weak transcription	Small Intestine	intestine
2	chr5:58424000-58447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:58424200-58446200	Weak transcription	Fetal Intestine Large	intestine
4	chr5:58424200-58446600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:58427200-58454000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:58429800-58447200	Weak transcription	Left Ventricle	heart
7	chr5:58430000-58442600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:58431000-58440000	Weak transcription	Fetal Lung	lung
9	chr5:58433000-58451600	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:58435000-58439600	Genic enhancers	A549	lung
11	chr5:58435200-58438000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:58435200-58439000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:58435400-58442400	Weak transcription	Hela-S3	cervix
14	chr5:58436000-58439200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:58437000-58438200	Enhancers	Colon Smooth Muscle	Colon
16	chr5:58437400-58438000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:58437400-58439600	Weak transcription	GM12878-XiMat	blood
18	chr5:58437400-58454000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:58437600-58438000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:58437600-58438000	Weak transcription	Fetal Heart	heart
21	chr5:58437800-58438000	Enhancers	Stomach Smooth Muscle	stomach
22	chr5:58437800-58444800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links