Variant report

Variant	rs7716977
Chromosome Location	chr5:178305050-178305051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178285493..178288791-chr5:178303197..178305318,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178338	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11249599	1.00[ASN][1000 genomes]
rs7719143	0.82[EUR][1000 genomes]
rs7731623	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv462574	chr5:178269682-178313078	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv600463	chr5:178269682-178313078	Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178288200-178317400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr5:178288800-178317400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:178289600-178317400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:178291200-178317400	ZNF genes & repeats	Liver	Liver
5	chr5:178292600-178305200	Strong transcription	Stomach Smooth Muscle	stomach
6	chr5:178296000-178305200	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr5:178296000-178305400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr5:178296000-178319200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr5:178296200-178315600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr5:178296200-178319200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:178296400-178311200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr5:178296400-178317600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr5:178297200-178315800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr5:178297400-178315600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr5:178297400-178317400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:178297400-178317400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
17	chr5:178297400-178317400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:178297600-178305200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr5:178297600-178317400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:178298000-178305200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr5:178298800-178317800	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr5:178299000-178310600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
23	chr5:178299000-178317600	ZNF genes & repeats	Fetal Brain Female	brain
24	chr5:178299200-178314000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr5:178299400-178310200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
26	chr5:178299400-178317400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:178299600-178309000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
28	chr5:178299600-178317400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr5:178299800-178317400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:178299800-178317600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:178300000-178305200	ZNF genes & repeats	Fetal Lung	lung
32	chr5:178300200-178305200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:178300200-178305200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
34	chr5:178300200-178305200	ZNF genes & repeats	HepG2	liver
35	chr5:178300200-178311400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr5:178300200-178315600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
37	chr5:178300400-178305200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
38	chr5:178301000-178305200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:178301000-178305200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:178301000-178305200	ZNF genes & repeats	Aorta	Aorta
41	chr5:178301000-178305400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:178301000-178306600	ZNF genes & repeats	Esophagus	oesophagus
43	chr5:178301000-178307400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:178301000-178308600	ZNF genes & repeats	Lung	lung
45	chr5:178301000-178308800	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr5:178301000-178308800	ZNF genes & repeats	Fetal Stomach	stomach
47	chr5:178301000-178308800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
48	chr5:178301000-178314800	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr5:178301000-178317400	ZNF genes & repeats	Adipose Nuclei	Adipose
50	chr5:178301200-178305200	ZNF genes & repeats	Ovary	ovary

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