Variant report

Variant	rs7717354
Chromosome Location	chr5:120155697-120155698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10900742	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900744	0.80[EUR][1000 genomes]
rs11241567	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241568	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11739528	0.85[ASN][1000 genomes]
rs11749110	0.85[ASN][1000 genomes]
rs11953061	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11953183	0.95[ASN][1000 genomes]
rs11954162	0.82[ASN][1000 genomes]
rs11959710	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12520572	0.83[EUR][1000 genomes]
rs12521338	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4317354	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4340941	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4412134	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4576171	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4624817	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4631209	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55833879	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56043914	0.85[ASN][1000 genomes]
rs56366998	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56405820	0.85[ASN][1000 genomes]
rs56412481	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62379837	0.81[EUR][1000 genomes]
rs62379846	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62379847	0.82[ASN][1000 genomes]
rs62379853	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62381083	0.85[ASN][1000 genomes]
rs62381087	0.83[ASN][1000 genomes]
rs62381088	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62381109	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62381111	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62381120	0.91[ASN][1000 genomes]
rs6595262	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66653209	0.85[ASN][1000 genomes]
rs6864919	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6869346	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6885643	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6891234	0.85[ASN][1000 genomes]
rs72783657	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7701853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704971	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7711644	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711647	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716293	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717562	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721615	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730641	0.81[ASN][1000 genomes]
rs7735871	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9327165	0.86[ASN][1000 genomes]
rs9686731	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9687387	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv599603	chr5:119953529-120317035	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949415	chr5:119957645-120459183	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1030613	chr5:119980213-120301205	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1029773	chr5:120018166-120213999	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1031403	chr5:120044993-120222128	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1033992	chr5:120045247-120232155	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1034523	chr5:120046649-120213999	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv537886	chr5:120046649-120213999	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1032430	chr5:120046652-120222128	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv599604	chr5:120046798-120223491	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv882788	chr5:120047147-120162357	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1025535	chr5:120050070-120222128	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv3369974	chr5:120051746-120319085	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv882789	chr5:120056258-120190213	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1017521	chr5:120061733-120175806	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1016322	chr5:120063385-120181846	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv882790	chr5:120066820-120162357	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv830466	chr5:120086428-120259016	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv882791	chr5:120100225-120293328	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1031293	chr5:120100625-120157821	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv524748	chr5:120104848-120219340	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1032601	chr5:120138772-120163808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120152400-120167200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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